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us: Computational Biologist

             
Apr
26
Flagship Pioneering, Inc.; United States
Computational analysis of large, complex, single cell genomics datasets from in vitro cellular model systems ; Deliver testable hypotheses/insights from complex high-dimensional data to inform target selection ; Linking results and insights between internal and public data, as well as orthogonal...      PhD in Bioinformatics, Biostatistics, Computer Science, Computational Biology, Genetics, Mathematics, Physics, Statistics or other related discipline ; 2-3 years post PhD experience applying quantitative approaches to solve biological problems ; Knowledge and experience of single-cell transcript...

us: Bioinformatician

             
Apr
24
Flagship Pioneering, Inc.; United States
Analyse antibody sequences (liability screening, clustering, etc.) from Sanger and Next Generation sequencing platforms; Develop and implement computational pipelines and algorithms for analysing antibody sequences; Organize data storage in accessible formats for other team members; Prepare data sum...      Master's or Ph.D. degree in Bioinformatics, Computational Biology, or a related field; Strong background in protein bioinformatics with a focus on sequence analysis; Knowledge of next-generation sequencing (NGS) data analysis and genomics databases; Proficiency in programming languages commonly used...

us: (Senior) Machine Learning Scientist

             
Apr
24
Flagship Pioneering, Inc.; Cambridge, Massachusetts, United States
Conceiving of and conducting independent ML research, motivated by scientific milestones important to our team; Collaborating with colleagues across Flagship to apply our research to proprietary biological data and processes; Working with our ML Engineers to scale and interpret experiments      PhD or MSc in a relevant field such as machine learning, computer science, math, physics etc. or equivalent practical experience; Significant deep learning experience relevant for position. Examples include geometric neural networks, generative modeling, representation learning, biological foundatio...

us: Machine Learning Scientist, Large Language Models for Materials

             
Apr
24
Flagship Pioneering, Inc.; Cambridge, Massachusetts, United States
Fine-tune, scale and deploy large language models over scientific and patent literature for knowledge extraction in materials synthesis and performance; Utilize and develop new prompt engineering strategies in the materials domain; Use LLM-backed agents for lab orchestration, design of experimental ...      PhD in Computer Science, Applied Mathematics, quantitative disciplines with strong focus in ML, or related field; Experience using a cloud computing service to reduce runtime to train and evaluate deep learning models; Coding experience with large language models (e.g. GPT or other autoregressive LL...

us: Data Engineer/Senior Data Engineer, Bioinformatics

             
Apr
22
Flagship Pioneering, Inc.; United States
Design, create, and manage database systems that allow biologists to investigate data independently; Automate workflows for data retrieval or storage in electronic lab notebooks (ELNs), such as Benchling; Collaborate with a team of scientists to help automate data analysis pipelines and build data i...      B.S. or M.S. in computer science or related field and 3+ years of industry experience; Extensive experience with database technologies, architecture, and management; NGS database development experience with virology, pathology, molecular biology, or similar datasets; Programming experience in script...

us: (Senior) Machine Learning Engineer

             
Apr
22
Flagship Pioneering, Inc.; Cambridge, Massachusetts, United States
Building scalable machine learning pipelines, including efficient parallelization and use of GPUs; Designing and coding data processing pipelines, ownership of company-wide data platform; Working closely with Platform Development and Biology teams to automate a tight design-build-test cycle for ML g...      Undergraduate or Master's degree in bioinformatics, computer science, mathematics, physics or related field and 4+ years of experience is required; Experience with MLOps practices and tools including version control, automated testing, and CI/CD; Proficient in Python and experience in using deep lea...

uk: Bioinformatics Engineer

             
Apr
20
Flagship Pioneering, Inc.; Cambridge, United Kingdom
Design, implement, and operate robust, scalable genomic data processing pipelines using Nextflow on AWS; Manage pipeline results using big data technologies (e.g. distributed databases); Manage pipeline-related assets to ensure that they are findable, accessible, interoperable and reusable; Apply be...      MSc or PhD or equivalent in bioinformatics, computational biology, computer science, or similar discipline; 3-plus years of post-graduate or industry experience developing high-throughput bioinformatic data processing pipelines; Experience in NGS mapping, variant calling and variant analysis preferr...

us: Head of Machine Learning

             
Apr
19
Flagship Pioneering, Inc.; United States
We are seeking a Head of Machine Learning to drive the vision, strategy, and execution across machine learning and data generation efforts      Ph.D. in machine learning, statistics, computer science, mathematical modeling, operations research, or related fields from a recognized higher-education establishment; >10 years of experience of machine learning leadership in the life sciences industry or in academia
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